BioShineR

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Containerize Bioconductor and Shiny with DockeR

This serves as a base image to deploy a R Shiny application with Shiny-Server including some basic Bioconductor packages.

Whats the need?

Rocker-Project is already have a very nice rocker/shiny on Debian, But few dependency are missing while installing few R and Bioconductor packages.

Anyway this codingene/bioshiner made on top of rocker/shiny only and loosely follow the same principles.

Principles

All Tags

| image | Bioc-Version | |——-|——| | codingene/bioshiner:3.10 | Bioconductor:3.10 |

Test

Clone this repository containing test app

git clone https://github.com/codingene/BioShineR

Run the app

docker run --rm -p 3838:3838 \
	-v ${PWD}/BioShineR/test/apps/biocmanager:/srv/shiny-server/ \
	-v /srv/shinylog/:/var/log/shiny-server/ \
	codingene/bioshiner:3.10

Open the app in browser: http://localhost:3838/