Currently on this pipeline three basic steps on any Sequence based analysis (starts from fastq files) present -
This can be used as a base to add other
git clone https://github.com/codingene/nextflow-base.git
Without cloning if just want to test run it.
nextflow run codingene/nextflow-base -profile test,docker
This will directly pull the repo from GitHub and execute.
Check the Documentation for more.